PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056068
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 297aa    MW: 32145.7 Da    PI: 7.1423
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056068genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.16.5e-15246280133
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                           C++C+ ++  Tp++Rrgp g+++LCnaCGl+++ k
  PGSC0003DMP400056068 246 CRHCNISSksTPMMRRGPAGPRSLCNACGLKWANK 280
                           *****99999**********************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.6E-12111146IPR010399Tify domain
PROSITE profilePS5132014.818111146IPR010399Tify domain
PfamPF062008.9E-13114145IPR010399Tify domain
PROSITE profilePS5101713.126178220IPR010402CCT domain
PfamPF062034.3E-16178220IPR010402CCT domain
SMARTSM004013.1E-7240292IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-9241280No hitNo description
Gene3DG3DSA:3.30.50.102.3E-12244280IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.09E-10245280No hitNo description
PROSITE patternPS003440246273IPR000679Zinc finger, GATA-type
PfamPF003206.6E-13246280IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAEANRRANM YGRETMNAAL HQDRHQQTQI DDDDDDDVVA AGGGGGGGGS GGGIESMDNP  60
TPHIRYDQHH HSHSHALHNG GAGGSMEMNG VEGVSHNALY GPSSEIVPTA GSGASDQLTL  120
SFQGEVYVFD AVSPEKVQAV LLLLGGYEVP PGIPAVNVAP QSQRASGDFP GRLNQPQRAA  180
SLNRFREKRK ERCFDKKIRY TVRKEVAMRM QRKKGQFTSA KSIPDEVGSS AEWNEGSGQE  240
EQETSCRHCN ISSKSTPMMR RGPAGPRSLC NACGLKWANK VSIELKIHSF PWFLFE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351719.20.0PREDICTED: GATA transcription factor 28-like
SwissprotQ8H1G04e-73GAT28_ARATH; GATA transcription factor 28
TrEMBLM1D7400.0M1D740_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000837730.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-73ZIM-like 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]